Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs10155132 chr4:3369500 A/G 8.48E-5 500 27.1 31.62 33.27 KM Plot
THCA rs10187155 chr2:29050318 T/G 0.000138 502 38.87 30.97 31.68 KM Plot
THCA rs10236917 chr7:43962860 T/C 4.6E-8 498 31.03 33.58 28.83 KM Plot
THCA rs10243969 chr7:16496643 T/C 3.67E-8 492 25.5 32.83 31.68 KM Plot
THCA rs10249569 chr7:16471712 G/T 2.75E-10 486 31.3 33.08 24.27 KM Plot
THCA rs10260502 chr7:16470531 T/C 1.27E-12 490 31.37 31.53 27.85 KM Plot
THCA rs10270229 chr7:43942734 A/G 7.36E-8 497 31.02 33.53 27.97 KM Plot
THCA rs1027614 chr15:72033224 T/G 5.9E-10 491 31.53 33.97 20 KM Plot
THCA rs10282432 chr7:16472337 A/T 1.99E-5 488 31.28 31.53 32.1 KM Plot
THCA rs1031467 chr2:123242415 C/G 0 503 7.32 34.13 31.47 KM Plot
THCA rs10409494 chr19:33377536 A/G 1.95E-5 503 32.93 35.2 31.4 KM Plot
THCA rs10417115 chr19:33386556 T/C 6.39E-6 496 31.38 35.2 32.93 KM Plot
THCA rs10435763 chr9:16885854 G/T 0.000145 495 31.57 31.53 27.38 KM Plot
THCA rs1045398 chr7:43992426 C/G 9.62E-6 502 31.32 33.08 32.37 KM Plot
THCA rs1045439 chr7:43992970 A/G 2.26E-8 503 31.03 33.52 32.37 KM Plot